Kobayashi, Y., Absher, D., Gulzar, Z., Young, S., McKenney, J., Peehl, D., Brooks, J., Myers, R., & Sherlock, G. (2011) DNA methylation profiling reveals novel biomarkers and important roles for DNA methyltransferases in prostate cancer. Genome Research, 21(7), 1017-1027. DOI: 10.1101/gr.119487.110  

Yi, J., Dhir, M., Guzzetta, A., Iacobuzio-Donahue, C., Heo, K., Yang, K., Suzuki, H., Toyota, M., Kim, H., & Ahuja, N. (2012) DNA methylation biomarker candidates for early detection of colon cancer. Tumor Biology, 33(2), 363-372. DOI: 10.1007/s13277-011-0302-2  

Marta Kulis, Manel Esteller. (2010) DNA methylation and cancer. Advances in Genetics, 27-56. DOI: 10.1016/B978-0-12-380866-0.60002-2  

Erental, A., Sharon, I., & Engelberg-Kulka, H. (2012) Two Programmed Cell Death Systems in Escherichia coli: An Apoptotic-Like Death Is Inhibited by the mazEF-Mediated Death Pathway. PLoS Biology, 10(3). DOI: 10.1371/journal.pbio.1001281  

Vesper, O., Amitai, S., Belitsky, M., Byrgazov, K., Kaberdina, A., Engelberg-Kulka, H., & Moll, I. (2011) Selective Translation of Leaderless mRNAs by Specialized Ribosomes Generated by MazF in Escherichia coli. Cell, 147(1), 147-157. DOI: 10.1016/j.cell.2011.07.047  

Belitsky, M., Avshalom, H., Erental, A., Yelin, I., Kumar, S., London, N., Sperber, M., Schueler-Furman, O., & Engelberg-Kulka, H. (2011) The Escherichia coli Extracellular Death Factor EDF Induces the Endoribonucleolytic Activities of the Toxins MazF and ChpBK. Molecular Cell, 41(6), 625-635. DOI: 10.1016/j.molcel.2011.02.023  

Lang, K., Davis, L., Torres-Kolbus, J., Chou, C., Deiters, A., & Chin, J. (2012) Genetically encoded norbornene directs site-specific cellular protein labelling via a rapid bioorthogonal reaction. Nature Chemistry. DOI: 10.1038/NCHEM.1250  

Chen, I., & Ting, A. (2005) Site-specific labeling of proteins with small molecules in live cells. Current Opinion in Biotechnology, 16(1), 35-40. DOI: 10.1016/j.copbio.2004.12.003  

Best, M. (2009) Click Chemistry and Bioorthogonal Reactions: Unprecedented Selectivity in the Labeling of Biological Molecules. Biochemistry, 48(28), 6571-6584. DOI: 10.1021/bi9007726  

Anderson, E., & Hamann, M. (2012) Detection of Rho GEF and GAP activity through a sensitive split luciferase assay system. Biochemical Journal, 441(3), 869-879. DOI: 10.1042/BJ20111111  

Jaiswal M, Dubey BN, Koessmeier KT, Gremer L, & Ahmadian MR. (2012) Biochemical assays to characterize Rho GTPases. Methods in molecular biology (Clifton, N.J.), 37-58. PMID: 22144266  

Massoud, T., Paulmurugan, R., De, A., Ray, P., & Gambhir, S. (2007) Reporter gene imaging of protein–protein interactions in living subjects. Current Opinion in Biotechnology, 18(1), 31-37. DOI: 10.1016/j.copbio.2007.01.007  

Chuang, H., Lee, E., Liu, Y., Lee, D., & Ideker, T. (2007) Network-based classification of breast cancer metastasis. Molecular Systems Biology. DOI: 10.1038/msb4100180  

Li, C., & Li, H. (2008) Network-constrained regularization and variable selection for analysis of genomic data. Bioinformatics, 24(9), 1175-1182. DOI: 10.1093/bioinformatics/btn081  

Chen, L., Xuan, J., Riggins, R., Clarke, R., & Wang, Y. (2011) Identifying cancer biomarkers by network-constrained support vector machines. BMC Systems Biology, 5(1), 161. DOI: 10.1186/1752-0509-5-161  

Monto, A., McKimm-Breschkin, J., Macken, C., Hampson, A., Hay, A., Klimov, A., Tashiro, M., Webster, R., Aymard, M., Hayden, F.... (2006) Detection of Influenza Viruses Resistant to Neuraminidase Inhibitors in Global Surveillance during the First 3 Years of Their Use. Antimicrobial Agents and Chemotherapy, 50(7), 2395-2402. DOI: 10.1128/AAC.01339-05  

Yen, H., Herlocher, L., Hoffmann, E., Matrosovich, M., Monto, A., Webster, R., & Govorkova, E. (2005) Neuraminidase Inhibitor-Resistant Influenza Viruses May Differ Substantially in Fitness and Transmissibility. Antimicrobial Agents and Chemotherapy, 49(10), 4075-4084. DOI: 10.1128/AAC.49.10.4075-4084.2005  

Hurt, A., Holien, J., & Barr, I. (2009) In Vitro Generation of Neuraminidase Inhibitor Resistance in A(H5N1) Influenza Viruses. Antimicrobial Agents and Chemotherapy, 53(10), 4433-4440. DOI: 10.1128/AAC.00334-09  

Yen, H., Hoffmann, E., Taylor, G., Scholtissek, C., Monto, A., Webster, R., & Govorkova, E. (2006) Importance of Neuraminidase Active-Site Residues to the Neuraminidase Inhibitor Resistance of Influenza Viruses. Journal of Virology, 80(17), 8787-8795. DOI: 10.1128/jvi.00477-06  

Zhang, X., Chien, E., Chalmers, M., Pascal, B., Gatchalian, J., Stevens, R., & Griffin, P. (2010) Dynamics of the β -Adrenergic G-Protein Coupled Receptor Revealed by Hydrogen−Deuterium Exchange . Analytical Chemistry, 82(3), 1100-1108. DOI: 10.1021/ac902484p  

Landgraf, R., Chalmers, M., & Griffin, P. (2011) Automated Hydrogen/Deuterium Exchange Electron Transfer Dissociation High Resolution Mass Spectrometry Measured at Single-Amide Resolution. Journal of The American Society for Mass Spectrometry, 23(2), 301-309. DOI: 10.1007/s13361-011-0298-2  

Wales, T., & Engen, J. (2006) Hydrogen exchange mass spectrometry for the analysis of protein dynamics. Mass Spectrometry Reviews, 25(1), 158-170. DOI: 10.1002/mas.20064  

Choi, Y., Moody, I., Sims, P., Hunt, S., Corso, B., Perez, I., Weiss, G., & Collins, P. (2012) Single-Molecule Lysozyme Dynamics Monitored by an Electronic Circuit. Science, 335(6066), 319-324. DOI: 10.1126/science.1214824  

Guo, H., Ingolia, N., Weissman, J., & Bartel, D. (2010) Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature, 466(7308), 835-840. DOI: 10.1038/nature09267  

Sato, F., Tsuchiya, S., Meltzer, S., & Shimizu, K. (2011) MicroRNAs and epigenetics. FEBS Journal, 278(10), 1598-1609. DOI: 10.1111/j.1742-4658.2011.08089.x  

Liu, J., Zheng, M., Tang, Y., Liang, X., & Yang, Q. (2011) microRNAs, an active and versatile group in cancers. International Journal of Oral Science, 3(4), 165-175. DOI: 10.4248/IJOS11063  

Lu, J., Getz, G., Miska, E., Alvarez-Saavedra, E., Lamb, J., Peck, D., Sweet-Cordero, A., Ebert, B., Mak, R., Ferrando, A.... (2005) MicroRNA expression profiles classify human cancers. Nature, 435(7043), 834-838. DOI: 10.1038/nature03702  

Ramaswamy, S. (2001) Multiclass cancer diagnosis using tumor gene expression signatures. Proceedings of the National Academy of Sciences, 98(26), 15149-15154. DOI: 10.1073/pnas.211566398  

Fantner, G., Barbero, R., Gray, D., & Belcher, A. (2010) Kinetics of antimicrobial peptide activity measured on individual bacterial cells using high-speed atomic force microscopy. Nature Nanotechnology, 5(4), 280-285. DOI: 10.1038/nnano.2010.29  

Carvalho, F., Carneiro, F., Martins, I., Assuncao-Miranda, I., Faustino, A., Pereira, R., Bozza, P., Castanho, M., Mohana-Borges, R., Da Poian, A.... (2011) Dengue Virus Capsid Protein Binding to Hepatic Lipid Droplets (LD) Is Potassium Ion Dependent and Is Mediated by LD Surface Proteins. Journal of Virology, 86(4), 2096-2108. DOI: 10.1128/JVI.06796-11  

Washburn, M., Wolters, D., & Yates, J. (2001) Large-scale analysis of the yeast proteome via multidimensional protein identification technology. Nature Biotechnology, 19(3), 242-247. DOI: 10.1038/85686  

Yang, F., Shen, Y., Camp, D., & Smith, R. (2012) High-pH reversed-phase chromatography with fraction concatenation for 2D proteomic analysis. Expert Review of Proteomics, 9(2), 129-134. DOI: 10.1586/epr.12.15  

Tran, J., Zamdborg, L., Ahlf, D., Lee, J., Catherman, A., Durbin, K., Tipton, J., Vellaichamy, A., Kellie, J., Li, M.... (2011) Mapping intact protein isoforms in discovery mode using top-down proteomics. Nature, 480(7376), 254-258. DOI: 10.1038/nature10575  

Dixon Scott J., Lemberg Kathryn M., Lamprecht Michael R., Skouta Rachid, Zaitsev Eleina M., Gleason Caroline E., Patel Darpan N., Bauer Andras J., Cantley Alexandra M., & Yang Wan Seok. (2012) Ferroptosis: An Iron-Dependent Form of Nonapoptotic Cell Death. Cell, 149(5), 1072. DOI: 10.1016/j.cell.2012.03.042  

Dolma Sonam, Lessnick Stephen L, Hahn William C, & Stockwell Brent R. (2003) Identification of genotype-selective antitumor agents using synthetic lethal chemical screening in engineered human tumor cells. Cancer Cell, 3(3), 296. DOI: 10.1016/S1535-6108(03)00050-3  

Yang Wan Seok, & Stockwell Brent R. (2008) Synthetic Lethal Screening Identifies Compounds Activating Iron-Dependent, Nonapoptotic Cell Death in Oncogenic-RAS-Harboring Cancer Cells. Chemistry , 15(3), 245. DOI: 10.1016/j.chembiol.2008.02.010  

Dunker A.Keith, Lawson J.David, Brown Celeste J, Williams Ryan M, Romero Pedro, Oh Jeong S, Oldfield Christopher J, Campen Andrew M, Ratliff Catherine M, & Hipps Kerry W. (2001) Intrinsically disordered protein. Journal of Molecular Graphics and Modelling, 19(1), 59. DOI: 10.1016/S1093-3263(00)00138-8  

Rautureau Gilles J. P., Day Catherine L., & Hinds Mark G. (2010) Intrinsically Disordered Proteins in Bcl-2 Regulated Apoptosis. International Journal of Molecular Sciences, 11(4), 1824. DOI: 10.3390/ijms11041808  

Rodi Diane J, Janes Robert W, Sanganee Hitesh J, Holton Robert A, Wallace B.A, & Makowski Lee. (1999) Screening of a library of phage-displayed peptides identifies human Bcl-2 as a taxol-binding protein. Journal of Molecular Biology, 285(1), 203. DOI: 10.1006/jmbi.1998.2303  

Kalkhoven Eric. (2004) CBP and p300: HATs for different occasions. Biochemical Pharmacology, 68(6), 1145-1155. DOI: 10.1016/j.bcp.2004.03.045  

Vo N, & Goodman R H. (2001) CREB-binding protein and p300 in transcriptional regulation. The Journal of biological chemistry. PMID: 11279224  

Avantaggiati M L, Ogryzko V, Gardner K, Giordano A, Levine A S, & Kelly K. (1997) Recruitment of p300/CBP in p53-dependent signal pathways. Cell, 1175-1184. PMID: 9215639  

Ferreon Josephine C, Lee Chul Won, Arai Munehito, Martinez-Yamout Maria A, Dyson H Jane, & Wright Peter E. (2009) Cooperative regulation of p53 by modulation of ternary complex formation with CBP/p300 and HDM2. Proceedings of the National Academy of Sciences of the United States of America. PMID: 19357310  

Alon Uri. (2009) How To Choose a Good Scientific Problem. Molecular Cell, 35(6), 726-728. DOI: 10.1016/j.molcel.2009.09.013  

Bourne Philip E., & Friedberg Iddo. (2006) Ten Simple Rules for Selecting a Postdoctoral Position. PLoS Computational Biology, 2(11). DOI: 10.1371/journal.pcbi.0020121  

Walters Jad, Schipper Joshua L., Swartz Paul, Mattos Carla, & Clark A. Clay. (2012) Allosteric modulation of caspase 3 through mutagenesis. Bioscience Reports, 32(4), 401-411. DOI: 10.1042/BSR20120037  

GAWEL RICHARD. (1998) Red wine astringency: a review. Australian Journal of Grape and Wine Research, 4(2), 74-95. DOI: 10.1111/j.1755-0238.1998.tb00137.x  

Pascal Christine, Poncet-Legrand Céline, Imberty Anne, Gautier Catherine, Sarni-Manchado Pascale, Cheynier Véronique, & Vernhet Aude. (2007) Interactions between a Non Glycosylated Human Proline-Rich Protein and Flavan-3-ols Are Affected by Protein Concentration and Polyphenol/Protein Ratio. Journal of Agricultural and Food Chemistry, 55(12), 4895-4901. DOI: 10.1021/jf0704108  

Canon Francis, Ballivian Renaud, Chirot Fabien, Antoine Rodolphe, Sarni-Manchado Pascale, Lemoine Jérôme, & Dugourd Philippe. (2011) Folding of a Salivary Intrinsically Disordered Protein upon Binding to Tannins. Journal of the American Chemical Society, 133(20), 7847-7852. DOI: 10.1021/ja200534f  

Paul S., Singh C., Mishra S., & Chaudhuri T. K. (2007) The 69 kDa Escherichia coli maltodextrin glucosidase does not get encapsulated underneath GroES and folds through trans mechanism during GroEL/GroES-assisted folding. The FASEB Journal, 21(11), 2874-2885. DOI: 10.1096/fj.06-7958com  

TRUSCOTT Kaye N., HOJ Peter B., & SCOPES Robert K. (1994) Purification and characterization of chaperonin 60 and chaperonin 10 from the anaerobic thermophile Thermoanaerobacter brockii. European Journal of Biochemistry, 222(2), 277-284. DOI: 10.1111/j.1432-1033.1994.tb18866.x  

Yamauchi Seiji, Ueda Yuya, Matsumoto Mika, Inoue Umihiko, & Hayashi Hidenori. (2012) Distinct features of protein folding by the GroEL system from a psychrophilic bacterium, Colwellia psychrerythraea 34H. Extremophiles, 16(6), 871-882. DOI: 10.1007/s00792-012-0483-7  

Poth A. G., Colgrave M. L., Lyons R. E., Daly N. L., & Craik D. J. (2011) From the Cover: Discovery of an unusual biosynthetic origin for circular proteins in legumes. Proceedings of the National Academy of Sciences, 108(25), 10127-10132. DOI: 10.1073/pnas.1103660108  

Saska I., Gillon A. D., Hatsugai N., Dietzgen R. G., Hara-Nishimura I., Anderson M. A., & Craik D. J. (2007) An Asparaginyl Endopeptidase Mediates in Vivo Protein Backbone Cyclization. Journal of Biological Chemistry, 282(40), 29721-29728. DOI: 10.1074/jbc.M705185200  

Aghajari Nushin, Haser Richard, Feller Georges, & Gerday Charles. (1998) Crystal structures of the psychrophilic α-amylase from Alteromonas haloplanctis in its native form and complexed with an inhibitor. Protein Science, 7(6), 1481-1481. DOI: 10.1002/pro.5560070626  

Aghajari Nushin, Feller Georges, Gerday Charles, & Haser Richard. (1998) Structures of the psychrophilic Alteromonas haloplanctis α-amylase give insights into cold adaptation at a molecular level. Structure, 6(12), 1503-1516. DOI: 10.1016/S0969-2126(98)00149-X  

Feller Georges. (2010) Protein stability and enzyme activity at extreme biological temperatures. Journal of Physics: Condensed Matter, 22(32), 323101. DOI: 10.1088/0953-8984/22/32/323101  

Gilis Dimitri. (2006) In Silico Analysis of the Thermodynamic Stability Changes of Psychrophilic and Mesophilic α-Amylases upon Exhaustive Single-Site Mutations. ChemInform, 37(31). DOI: 10.1002/chin.200631215