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  • September 20, 2014
  • 10:15 AM
  • 4 views

Autumn Leaves: More Than Just Pretty Colors

by Kelly Hallstrom in The 'Scope

Why do the leaves change color in the fall? It might not be for the reason you think...... Read more »

Schaefer HM, & Rolshausen G. (2006) Plants on red alert: do insects pay attention?. BioEssays : news and reviews in molecular, cellular and developmental biology, 28(1), 65-71. PMID: 16369938  

  • September 20, 2014
  • 04:51 AM
  • 12 views

Antibiotics and risk of pediatric Crohn's disease

by Paul Whiteley in Questioning Answers

I couldn't let the meta-analysis from Ryan Ungaro and colleagues [1] pass without a brief mention. Concluding that: "Exposure to antibiotics appears to increase the odds of being newly diagnosed with CD [Crohn's disease] but not UC [ulcerative colitis]" and further: "This risk is most marked in children diagnosed with CD", the implications from this and other findings in this area may be far-reaching.I've talked before on this blog about antibiotic exposure and risk of inflam........ Read more »

Ungaro R, Bernstein CN, Gearry R, Hviid A, Kolho KL, Kronman MP, Shaw S, Van Kruiningen H, Colombel JF, & Atreja A. (2014) Antibiotics Associated With Increased Risk of New-Onset Crohn's Disease But Not Ulcerative Colitis: A Meta-Analysis. The American journal of gastroenterology. PMID: 25223575  

  • September 19, 2014
  • 07:28 PM
  • 21 views

Nanosponges Clean up Antibody-mediated Autoimmune Disease

by Gabriel in Lunatic Laboratories

What does lupus, rheumatoid arthritis, type I diabetes, multiple sclerosis, and rheumatic heart disease have in common? All of these (and many other) apparently unrelated disorders are caused by autoimmunity, in which the immune system produces antibodies that attack normal, healthy cells and tissues. Currently considered incurable, these autoimmune diseases can be managed, but to varying degrees and not without serious side effects. Moreover, autoimmune diseases include a wide range of dysfunct........ Read more »

Copp JA, Fang RH, Luk BT, Hu CM, Gao W, Zhang K, & Zhang L. (2014) Clearance of pathological antibodies using biomimetic nanoparticles. Proceedings of the National Academy of Sciences of the United States of America, 111(37), 13481-6. PMID: 25197051  

  • September 19, 2014
  • 06:25 PM
  • 23 views

Estimating how much we don't know

by Iddo Friedberg in Byte Size Biology

Most of our understanding of what genes do comes from computational predictions, rather than actual experiments. For almost any given gene that is sequenced, its function is determined by putting its sequence through one or more function annotation algorithms. Computational annotation is cheaper and more feasible than cloning, translating, and assaying the gene product (typically a protein) to find out exactly what it does. Experiments can be long, expensive and, in many cases, impossible to pe........ Read more »

  • September 19, 2014
  • 01:21 PM
  • 30 views

New test for Diagnosing Alzheimer’s Early

by Gabriel in Lunatic Laboratories

Alzheimer’s diagnosis is important, like the famous slogan “with a stroke, time lost is brain lost,” detecting alzheimer’s is important in order to stave off cognitive decline. A just like a stroke time lost is brain lost. Unfortunately early diagnosis has been hard to come by, but now researchers say a simple test that combines thinking and movement can help to detect heightened risk for developing Alzheimer’s disease in a person. The best part, they say this will work even before the........ Read more »

  • September 19, 2014
  • 05:06 AM
  • 19 views

Air travel may cause pneumothorax in BHD patients

by Lizzie Perdeaux in BHD Research Blog

One concern many BHD patients have is whether it is safe to take commercial flights, or whether this would increase the chances of a pneumothorax. A recently published study, by Professor Pieter Postmus and his team at the VU Medical … Continue reading →... Read more »

Postmus PE, Johannesma PC, Menko FH, & Paul MA. (2014) In-Flight Pneumothorax: Diagnosis May Be Missed because of Symptom Delay. American journal of respiratory and critical care medicine, 190(6), 704-5. PMID: 25221882  

  • September 19, 2014
  • 04:08 AM
  • 20 views

Increasing parental age and autism severity?

by Paul Whiteley in Questioning Answers

An interesting paper by David Geier and colleagues [1] (open-access here) caught my eye recently, concluding that there was a lack of support for the suggestion that: "increasing parental age was associated with increasing autism spectrum disorder phenotypic severity"."the snozzberries taste like snozzberries".Before progressing through the paper and its possible implications, the eagle-eyed out there might have already spotted the name Dr Brian Hooker on the authorship list of the Geier paper. ........ Read more »

  • September 18, 2014
  • 11:45 PM
  • 19 views

Experimental and comparative oncology: zebrafish, dogs, elephants

by Artem Kaznatcheev in Evolutionary Games Group

One of the exciting things about mathematical oncology is that thinking about cancer often forces me to leave my comfortable arm-chair and look at some actually data. No matter how much I advocate for the merits of heuristic modeling, when it comes to cancer, data-agnostic models take second stage to data-rich modeling. This close relationship […]... Read more »

Gallaher, J., & Anderson, A.R. (2013) Evolution of intratumoral phenotypic heterogeneity: the role of trait inheritance. Interface Focus, 3(4), 20130016. arXiv: 1305.0524v1

  • September 18, 2014
  • 03:44 PM
  • 47 views

MERS-CoV vaccine

by thelonevirologist in Virology Tidbits

MERS-CoV is the causative agent of a severe and fatal respiratory illness in humans with no known effective antiviral therapy or vaccine. Although MERS-CoV infections have been reported from countries outside the Arabian peninsula, local transmission with the exception of family cluster of three cases in Tunisia (with the index case being infected in the KSA) has been limited to the Kingdom of Saudi Arabia, the Kingdom of Jordan, Qatar, Oman, and the United Arab Emirates. Recent developments on ........ Read more »

Corman VM, Jores J, Meyer B, Younan M, Liljander A, Said MY, Gluecks I, Lattwein E, Bosch BJ, Drexler JF.... (2014) Antibodies against MERS coronavirus in dromedary camels, Kenya, 1992-2013. Emerging infectious diseases, 20(8), 1319-22. PMID: 25075637  

Yang L, Wu Z, Ren X, Yang F, Zhang J, He G, Dong J, Sun L, Zhu Y, Zhang S.... (2014) MERS-related betacoronavirus in Vespertilio superans bats, China. Emerging infectious diseases, 20(7), 1260-2. PMID: 24960574  

  • September 18, 2014
  • 12:58 PM
  • 55 views

Is Stress Eating Away at You? No, Literally…

by Gabriel in Lunatic Laboratories

Ever wonder why, when people are too stressed, they are often grouchy, grumpy, nasty, distracted or forgetful? It may not be something you’ve done, in fact it turns out stress is literally tearing apart the brain. By this I mean that researchers have just highlighted a fundamental synaptic mechanism that explains the relationship between chronic stress and the loss of social skills and cognitive impairment. When triggered by stress, an enzyme attacks a synaptic regulatory molecule in the brain........ Read more »

van der Kooij, M., Fantin, M., Rejmak, E., Grosse, J., Zanoletti, O., Fournier, C., Ganguly, K., Kalita, K., Kaczmarek, L., & Sandi, C. (2014) Role for MMP-9 in stress-induced downregulation of nectin-3 in hippocampal CA1 and associated behavioural alterations. Nature Communications, 4995. DOI: 10.1038/ncomms5995  

  • September 18, 2014
  • 08:00 AM
  • 78 views

Pythons and the Land - The Bangladesh Python Project Part IV --Guest Post--

by David Steen in Living Alongside Wildlife

By Jon Hakim

Make sure to start at Part I.

“Snake call!  It's the python.  Are you up?  We got a call for the python.”









The words were almost the same, but I woke up to see that
Caesar's face held a grimace.  The
call he feared had come. 






Let's back up to the night before.



In the last post I left you in a moment of triumph.  Kanai had led four of us right to our
target species... Read more »

Rahman, Shahriar Caesar, & et al. (2013) Monsoon does matter: annual activity patterns in a snake assemblage from Bangladesh. The Herpetological Journal, 203-208. info:/

  • September 18, 2014
  • 04:50 AM
  • 88 views

Anxiety and sensory over-responsivity linked to gut issues in autism

by Paul Whiteley in Questioning Answers

"The name's Lonnegan! Doyle Lonnegan!"Consider this micropost an extension of some previous discussions on this blog about how gastrointestinal (GI) issues present in cases of autism might show some connection to the presence of anxiety and sensory issues (see here). Today I'm discussing further research by Micah Mazurek and colleagues [1] which follows a previous publication by this author [2] on this topic.In the latest paper, Dr Mazurek and colleagues describe the course of abdominal pain in ........ Read more »

  • September 17, 2014
  • 02:49 PM
  • 46 views

September 17, 2014

by Erin Campbell in HighMag Blog

All good things must end—even the focal adhesions that are so key to cell migration. Today’s notable image is the first live cell visualization of ECM degradation at focal adhesions, in a recent paper that reports the link between CLASPs, exocytosis, and focal adhesion turnover. Cell migration depends on the precisely-timed formation of focal adhesions (FAs) that link the crawling cell to the extracellular matrix (ECM). FAs serve as anchor points for the crawling cell, yet must later di........ Read more »

  • September 17, 2014
  • 01:24 PM
  • 53 views

Biofilms: Using Bacteria for new Designer Nanomaterials

by Gabriel in Lunatic Laboratories

For most people biofilms conjure up images of slippery stones in a streambed and dirty drains. While there are plenty of "bad" biofilms around – they are even the same stuff that causes pesky dental plaque and a host of other more serious medical problems – a team of researchers sees biofilms as a robust new platform for designer nanomaterials that could clean up polluted rivers, manufacture pharmaceutical products, fabricate new textiles, and more.... Read more »

Peter Q. Nguyen,, Zsofia Botyanszki,, Pei Kun R. Tay,, & Neel S. Joshi. (2014) Programmable biofilm-based materials from engineered curli nanofibres. Nature Communications. info:/10.1038/ncomms5945

  • September 17, 2014
  • 12:48 PM
  • 53 views

Live Fast, Die Young: Evolutionary Outcomes of an Asteroid Impact

by Melissa Chernick in Science Storiented

A new semester has started and with it an influx of new students into the lab has begun. Busy has become my middle name. So when I was looking around for a paper to write about I wanted something different and cool. Not exactly hard to find in science. The asteroid known as 2012 DA14 will narrowly miss Earth this Friday, the closest known asteroid flyby on record. And by close we’re talking within the orbits of many communications satellites. This got me thinking about and looking for recent p........ Read more »

  • September 17, 2014
  • 09:46 AM
  • 54 views

Video Tip of the Week: GOLD, Genomes OnLine Database

by Mary in OpenHelix

Yes, I know some people suffer from YAGS-malaise (Yet Another Genome Syndrome), but I don’t. I continue to be psyched for every genome I hear about. I even liked the salmon lice one. And Yaks. The crowd-funded Puerto Rican parrot project was so very neat. These genomes may not matter much for your everyday life, […]... Read more »

Liolios Konstantinos, Lynette Hirschman, Ioanna Pagani, Bahador Nosrat, Peter Sterk, Owen White, Philippe Rocca-Serra, Susanna-Assunta Sansone, Chris Taylor, & Nikos C. Kyrpides. (2012) The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness. Standards in Genomic Sciences, 6(3), 444-453. DOI: http://dx.doi.org/10.4056/sigs.2675953  

Field Dawn, Tanya Gray, Norman Morrison, Jeremy Selengut, Peter Sterk, Tatiana Tatusova, Nicholas Thomson, Michael J Allen, Samuel V Angiuoli, & Michael Ashburner. (2008) The minimum information about a genome sequence (MIGS) specification. Nature Biotechnology, 26(5), 541-547. DOI: http://dx.doi.org/10.1038/nbt1360  

  • September 17, 2014
  • 08:28 AM
  • 63 views

Builders and Blocks – Engineering Blood Vessels with Stem Cells

by Jalees Rehman in The Next Regeneration

Back in 2001, when we first began studying how regenerative cells (stem cells or more mature progenitor cells) enhance blood vessel growth, our group as well as many of our colleagues focused on one specific type of blood vessel: arteries. Arteries are responsible for supplying oxygen to all organs and tissues of the body and arteries are more likely to develop gradual plaque build-up (atherosclerosis) than veins or networks of smaller blood vessels (capillaries). Once the amount of plaque in an........ Read more »

Paul JD, Coulombe KL, Toth PT, Zhang Y, Marsboom G, Bindokas VP, Smith DW, Murry CE, & Rehman J. (2013) SLIT3-ROBO4 activation promotes vascular network formation in human engineered tissue and angiogenesis in vivo. Journal of molecular and cellular cardiology, 124-31. PMID: 24090675  

  • September 17, 2014
  • 08:05 AM
  • 78 views

Should I Stay Or Should I Go

by Mark Lasbury in As Many Exceptions As Rules

Bacteria can swarm to conquer new territory or settle into structured biofilms, not unlike tribes that are nomadic versus those that build cities. New research indicates has shed light on the mechanics of swarming and biofilm production, including the function of extracellular DNA and secreted polysaccharides. Both biofilms and swarming depend on quorum sensing, and several new papers have identified chemicals that can interrupt quorum sensing in pathogenic bacteria and therefore prevent disease........ Read more »

Gloag ES, Turnbull L, Huang A, Vallotton P, Wang H, Nolan LM, Mililli L, Hunt C, Lu J, Osvath SR.... (2013) Self-organization of bacterial biofilms is facilitated by extracellular DNA. Proceedings of the National Academy of Sciences of the United States of America, 110(28), 11541-6. PMID: 23798445  

Alteri CJ, Himpsl SD, Pickens SR, Lindner JR, Zora JS, Miller JE, Arno PD, Straight SW, & Mobley HL. (2013) Multicellular bacteria deploy the type VI secretion system to preemptively strike neighboring cells. PLoS pathogens, 9(9). PMID: 24039579  

  • September 17, 2014
  • 06:29 AM
  • 61 views

Autoimmune disease risk and eating disorders

by Paul Whiteley in Questioning Answers

"We were set up. The cops were waiting for us.""We observed an association between eating disorders and several autoimmune diseases with different genetic backgrounds. Our findings support the link between immune-mediated mechanisms and development of eating disorders".So said the paper by Anu Raevuori and colleagues [1] (open-access) based on an analysis of over 2300 people "treated at the Eating Disorder Unit of Helsinki University Central Hospital between 1995 and 2010" compared with nea........ Read more »

Raevuori A, Haukka J, Vaarala O, Suvisaari JM, Gissler M, Grainger M, Linna MS, & Suokas JT. (2014) The increased risk for autoimmune diseases in patients with eating disorders. PloS one, 9(8). PMID: 25147950  

  • September 17, 2014
  • 06:09 AM
  • 63 views

Unwelcome colonisers: biofilm formation on voice prostheses

by socgenmicro in Microbe Post

A human being’s voice is one of their most distinguishing and individual features. Most of us have experienced the frustration of temporarily losing our voices – but for many survivors of laryngeal cancer (cancer of the voice box), this loss … Continue reading →... Read more »

Talpaert, M., Balfour, A., Stevens, S., Baker, M., Muhlschlegel, F., & Gourlay, C. (2014) Candida Biofilm Formation on Voice Prostheses. Journal of Medical Microbiology. DOI: 10.1099/jmm.0.078717-0  

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